fun.imagej.segmentation.imp
analyze-particles
(analyze-particles imp & args)
Use the ImageJ particle analyzer.
color-code-rois
(color-code-rois imp roi-maps key-fn)
Return an imp with segments labeled based on a measure.
You need to run analyze particles first.
imp-to-rois
(imp-to-rois imp & args)
Return a collection of ROIs from an imp.
rois-to-imp
(rois-to-imp imp rois & args)
Render a collection of rois as an image. Currently defaults to binary, will change.
This function writes to imp. Only works on 1 slice.
save-results-table-as-csv
(save-results-table-as-csv result-table filename)
Save the entire results table to a CSV file.
segment-attribute-histogram
(segment-attribute-histogram result-table measure)(segment-attribute-histogram result-table measure basename)
Get a histogram for a given attribute of all segments.
segment-attribute-imp
(segment-attribute-imp measure imp)
Return an imp with segments labeled based on a measure.
You need to run analyze particles first.